PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012583m
Common NameCISIN_1g009943mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 461aa    MW: 51499.8 Da    PI: 6.4483
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012583mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-17158207155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  orange1.1g012583m 158 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                        78*******************......44*************************98 PP

2AP241.82.7e-13250300155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  orange1.1g012583m 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDRAAVKCNG 300
                        89********.7******5553..2.26**********99*********988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-16158216IPR016177DNA-binding domain
PfamPF008479.2E-10158207IPR001471AP2/ERF domain
CDDcd000183.71E-11159214No hitNo description
SMARTSM003802.3E-30159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-18159215IPR001471AP2/ERF domain
PROSITE profilePS5103218.044159215IPR001471AP2/ERF domain
CDDcd000185.08E-25250310No hitNo description
PfamPF008477.9E-9250299IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17250310IPR016177DNA-binding domain
PROSITE profilePS5103215.567251308IPR001471AP2/ERF domain
SMARTSM003801.6E-32251314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-16251308IPR001471AP2/ERF domain
PRINTSPR003677.6E-6252263IPR001471AP2/ERF domain
PRINTSPR003677.6E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MWDLNDSLKD IEESEACSSQ KTSIDGDDEK GKQVGSVSNS SSSAVVIENG SDEEIGASER  60
RLLSRSGGSK IFGVCLYQEA MEESEPEPPV TRQFFPVDFQ EQQATSSEAG AGGLAFPRAN  120
WVGVKFCQSE PIVEAGKSVI EAPQPLKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDSG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGAEA DINFSIEDYE DDLKQMSNLT KEEFVHVLRR  240
QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEVEAARA YDRAAVKCNG  300
KDAVTNFDPS LYQDELKASG HGVDHNLDLS LGSSASNQQS SADFANRMQY TVMERPAPAS  360
LPNEVDWHNR GYRPKQQEAY SRQHDLPYKR DGYSEAETMQ LLSQTHLQSP ASSSLNKSSE  420
MQRYEQFRRS GESHLLHMVP PQCNQSNYQV GKAADYSIFN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.63470.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8836650.0EU883665.1 Poncirus trifoliata transcription factor APETALA2 (AP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006494467.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X4
SwissprotP479271e-128AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A067GV060.0A0A067GV06_CITSI; Uncharacterized protein
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-116AP2 family protein